The result of PRAGMA COMPILE_OPTIONS : COMPILER=gcc-9.3.0 ENABLE_COLUMN_METADATA ENABLE_DBSTAT_VTAB ENABLE_FTS3 ENABLE_FTS3_PARENTHESIS ENABLE_FTS3_TOKENIZER ENABLE_FTS4 ENABLE_FTS5 ENABLE_JSON1 ENABLE_LOAD_EXTENSION ENABLE_PREUPDATE_HOOK ENABLE_RTREE ENABLE_SESSION ENABLE_STMTVTAB ENABLE_UNLOCK_NOTIFY ENABLE_UPDATE_DELETE_LIMIT HAVE_ISNAN LIKE_DOESNT_MATCH_BLOBS MAX_SCHEMA_RETRY=25 MAX_VARIABLE_NUMBER=250000 OMIT_LOOKASIDE SECURE_DELETE SOUNDEX TEMP_STORE=1 THREADSAFE=1 USE_URI I changed the first column of my rtree table to match integer type. No change, same error.