Steps:
1. [Clone SQLite using Fossil and open it into a check-out directory][1].
2. Say:
fossil bisect good version-3.16.2
fossil bisect bad version-3.17.0
./configure --with-whatever-args-you-need
3. `make sqlite3.c`
4. Copy `sqlite3.c` (the amalgamation) to wherever you build from normally, build and test your project, and make a verdict.
5. Either say `fossil bisect good` or `fossil bisect bad` to record your verdict and get a new version to test.
6. If Fossil reports that the bisect is complete, skip to next step; else goto 3.
7. Say `fossil status` and send the result here.
However, realize that there's a fair chance that the behavior was changed on purpose and won't be changed back. Examining the commit comment for the version reported in step 7 or the commit diff might help you to understand which is the case.
[1]: https://sqlite.org/src/doc/trunk/README.md