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SQLite3 v3.34 ANOMALY - Precompiled Binaries for Windows
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Are you using sqlite3_exec() with a callback to managed code?  If so, would you be willing to show the declarations, with attributes, that you use for sqlite3_exec() and your callback?

If you are not using such a callback, your experience is a testament to the usual, one-way interop being a heavily trodden set of code paths.