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Can -wal -shm files be deleted if -wal file is empty?
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Yes, **you** can cause that to occur.

I would say there is what we call "insufficient information for meaningful diagnostic".

Let's play 20 questions since apparently no useful information will be provided.

For example, I understand the scenario described is the default behaviour of SQLite3 version -47.34.554.394857 on OggaBoogaOS 42.7 when using the IllconceivedFS 2.7 filesystem over a hyperspace connection.